The purpose of this study is to compare the ichthyofauna between the eelgrass bed waters located in the open sea and the nearby sea free of eelgrass, and this study collected a total of 26 species. Comparing the fish collected on the eelgrass bed (St.2) of Geomun?.do coast with the fish collected on the coastal waters (St.1) void of the nearby eelgrass bed, the fish collected from the eelgrass bed included 19 species, 413 individual with 16,110.6g in weight while the fish collected from the coastal waters void of the eelgrass bed included 19 species, 290 individuals with 12,961.5g in weight. Accordingly, it was found that the population size and biomass of the fish collected from the eelgrass bed were higher than the coastal watersvoid of the eelgrass. This study could identify that diversity, richness, evenness index except dominance were also much higher even in the result of cluster analysis.